A Passive Star Polymer in a Dense Active Bath: Insights from Computer Simulations
Yadav, Ramanand Singh; Sharma, Sanaa; Metzler, Ralf; Chakrabarti, Rajarshi.
Soft Matter 2024, 20, 3910.
Compound Giant Unilamellar Vesicle as a Model for Electrohydrodynamics of an Artificial Nucleate Cell
Kumar, Rupesh; Thaokar, Rochish M.; Chakrabarti, Rajarshi
Soft Matter 2024, xxx, xxxx.
Correction: A passive star polymer in a dense active bath: insights from computer simulations
Yadav, Ramanand Singh; Sarma, Sanaa; Metzler, Ralf; Chakrabarti, Rajarshi
Soft Matter 2024, 20, 5258.
Decoding the dynamics of BCL9 triazole stapled peptide
Gaikwad, Vikram; Choudhury, Asha Rani; Chakrabarti, Rajarshi
Biophys. Chem. 2024, 307, 107197.
Dynamic clustering of active rings
Theeyancheri, Ligesh; Chaki, Subhasish; Bhattacharjee, Tapomoy; Chakrabarti, Rajarshi.
Phys. Rev. Res. 2024, 6, L012038
Osmolyte-induced Conformational Stabilization of a Hydrophobic Polymer
Nanavare, Pooja; Sarkar, Soham; Jena, Abhijit Bijay; Chakrabarti, Rajarshi
Phys. Chem. Chem. Phys. xx, xxxx (2024).
A Polymer Chain with Dipolar Active Forces in Connection to Spatial Organization of Chromatin
Chaki, Subhasish; Theeyancheri, Ligesh; Chakrabarti, Rajarshi.
Soft Matter 2023, 19, 1348-1355.
Active dynamics of linear chains and rings in porous media
Theeyancheri, Ligesh; Chaki, Subhasish; Bhattacharjee, Tapomoy; Chakrabarti, Rajarshi.
J. Chem. Phys. 2023, 159, 014902.
Dynamics of a Methane Hydrophobe in Aqueous Choline Chloride Solution: Insights from Molecular Dynamics Simulations
Nanavare, Pooja; Theeyancheri, Ligesh; Sarkar, Soham; Chakrabarti, Rajarshi.
Chem. Phys. Impact 2023, 6, 100223.
Dynamics of a spherical self-propelled tracer in a polymeric medium: interplay of self-propulsion, stickiness, and crowding
Yadav, Ramanand Singh; Das, Chintu; Chakrabarti, Rajarshi.
Soft Matter 2023, 19, 689-700.
Dynamics of self-propelled tracer particles inside a polymer network
Kumar, Praveen; Chakrabarti, Rajarshi.
Phys. Chem. Chem. Phys. 2023, 25, 1937.
Escape dynamics of a self-propelled nanorod from circular confinements with narrow openings
Kumar, Praveen; Chakrabarti, Rajarshi
Soft Matter 2023, 19, 6743-6753.
Shear viscosity for finitely extensible chains with fluctuating internal friction and hydrodynamic interactions
Kailasham, R; Chakrabarti, Rajarshi; Prakash, J. Ravi.
J. Rheology 2023, 67, 105.
Structure and dynamics of an active polymer chain inside a nanochannel grafted with polymers
Sahoo, Rajiblochan; Chakrabarti, Rajarshi
Soft Matter 2023, 19, 5978-5988.
Chemically symmetric and asymmetric self-driven rigid dumbbells in 2D polymer gel
Kumar, Praveen; Theeyancheri, Ligesh; Chakrabarti, Rajarshi
Soft Matter 2022, 18, 2663-2671.
Computational design of stapled peptide inhibitor againstSARS-CoV-2 receptor binding domain
Choudhury, Asha Rani; Maity, Atanu; Chakraborty, Sayantani; Chakrabarti, Rajarshi.
Peptide Science 2022, e24267
Distinct mode of membrane interaction and disintegration by diverse class of antimicrobial peptides
Agadi, Nutan; Maity, Atanu; Jha, Akash, Kumar; Chakrabarti, Rajarshi; Kumar, Ashutosh
BBA - Biomembranes 2022, 1864, 184047
In Silico Studies of Active Probe Dynamics in Crowded Media
Theeyancheri, Ligesh; Sahoo, Rajiblochan; Kumar, Praveen; Chakrabarti, Rajarshi
ACS Omega 2022, 7, 33637-33650
Migration of active rings in porous media
Theeyancheri, Ligesh; Chaki, Subhasish; Bhattacharjee, Tapomoy; Chakrabarti, Rajarshi.
Phys. Rev. E 2022, 106, 014504
Motion of an active particle with dynamical disorder
Goswami, Koushik; Chakrabarti, Rajarshi
Soft Matter 2022, 18, 2332-2345.
Reconfiguration, swelling and tagged monomer dynamics of a single polymer chain in Gaussian and non-Gaussian active baths
Goswami, Koushik; Chaki, Subhasish; Chakrabarti, Rajarshi.
J. Phys. A: Math & Theo. 2022, 55, 423002.
Structure and Orientation of Water and Choline Chloride Molecules Around a Methane Hydrophobe: A Computer Simulation Study
Nanavare, Pooja; Choudhury, Asha Rani; Sarkar, Soham; Maity, Atanu; Chakrabarti, Rajarshi.
ChemPhysChem 2022, 23, e202200446.
Transport of a self-propelled tracer through a hairy cylindrical channel: interplay of stickiness and activity
Sahoo, Rajiblochan; Theeyancheri, Ligesh; Chakrabarti, Rajarshi
Soft Matter 2022, 18, 1310-1318.
Effect of Stapling on the Thermodynamics of mdm2–p53 Binding
Maity, Atanu; Choudhury, Asha Rani; Chakrabarti, Rajarshi.
J. Chem. Inf. Model. 2021, 61, 1989-2000.
How important are fluctuations in the treatment of internal friction in polymers?
Kailasham, R; Chakrabarti, Rajarshi; Prakash, J. Ravi.
Soft Matter 2021, 17, 7133-7157.
In Silico Elucidation of Molecular Picture of Water−Choline Chloride Mixture
Sarkar, Soham; Maity, Atanu; Chakrabarti, Rajarshi.
J. Phys. Chem. B 2021, 125, 13212-13228.
Microscopic Structural Features of Water in Aqueous-Reline Mixture of Varying Compositions
Sarkar, Soham; Maity, Atanu; Chakrabarti, Rajarshi.
Phys. Chem. Chem. Phys. 2021, 23, 3779-3793.
Rouse model with fluctuating internal friction
Kailasham, Ramalingam; Chakrabarti, Rajarshi; Prakash, J. Ravi.
J. Rheol. 2021, 65, 903-923.
Stochastic resetting and first arrival subjected to Gaussian noise and Poisson white noise
Goswami, Koushik; Chakrabarti, Rajarshi
Phys. Rev. E 2021, 104, 034113
Choline chloride as a nano‐crowder protects HP‐36 from urea‐induced denaturation: Insights from Solvent Dynamics and Protein‐Solvent interaction
Maity, Atanu; Sarkar, Soham; Theeyancheri, Ligesh; Chakrabarti, Rajarshi.
ChemPhysChem 2020, 21, 552-567.
Directing the diffusion of a non-magnetic nanosized active particle with external magnetic fields
Kaiser, Martin; Sánchez, Pedro A.; Samanta, Nairhita; Chakrabarti, Rajarshi; Kantorovich, Sofia S.
J. Phys. Chem. B 2020, 124, 8188.
Escape of a passive particle from activity-induced energy landscape: Emergence of slow and fast effective diffusion
Chaki, Subhasish; Chakrabarti, Rajarshi
Soft Matter 2020,16, 7103-7115.
Translational and rotational dynamics of a self-propelled Janus probe in crowded environments
Theeyancheri, Ligesh; Chaki, Subhasish Chaki; Samanta, Nairhita; Goswami, Rohit; Chelakkot, Raghunath; Chakrabarti, Rajarshi.
Soft Matter 2020, 16, 8482-8491.
Wet and dry internal friction can be measured with the Jarzynski equality
Kailasham, R; Chakrabarti, Rajarshi; Prakash, J. Ravi.
Phys. Rev. Res. 2020, 2, 013331
Azadirachtin inhibits amyloid formation, disaggregates pre-formed fibrils and protects pancreatic β-cells from human islet amyloid polypeptide/amylin induced cytotoxicity
Dubey, Richa; Patil, Ketaki; Dantu, Sarath chandra; Sardesai, Devika M; Bhatia, Parnika; Malik, Nikita; Acharya, Jhankar D.; Sarkar, Soham; Ghosh, Soumadwip; Chakrabarti, Rajarshi; Sharma, Shilpy; Kumar, Ashutosh.
Biochemical Journal 2019, 476, 889-907
Effects of active fluctuations on energetics of a colloidal particle: superdiffusion, dissipation and entropy production
Chaki, Subhasish; Chakrabarti, Rajarshi.
Physica A 2019, 530, 121574.
Enhanced diffusion, swelling and slow reconfiguration of a single chain in non-Gaussian active bath
Chaki, Subhasish; Chakrabarti, Rajarshi.
J. Chem. Phys. 2019, 150, 094902
Salt Induced Structural Collapse, Swelling and Signature of Aggregation of Two ssDNA Strands: Insights from Molecular Dynamics Simulation
Sarkar, Soham; Maity, Atanu; Sarma, Aditya Phukon; Ghosh, Soumadwip; Chakrabarti, Rajarshi.
J. Phys. Chem. B, 2019, 123, 47-56.
Transport of probe particles in polymer network: effects of probe size, network rigidity and probe-polymer interaction
Kumar, Praveen; Theeyancheri, Ligesh; Chaki, Subhasish; Chakrabarti, Rajarshi.
Soft Matter 2019, 15, 8992-9002.
Entropy production and work fluctuation relations for a single particle in active bath
Chaki, Subhasish; Chakrabarti, Rajarshi.
Physica A, 2018, 511, 302-315
Rheological consequences of wet and dry friction in a dumbbell model with hydrodynamic interactions and internal viscosity
Kailasham, R; Chakrabarti, Rajarshi; Ravi Prakash, J
J. Chem. Phys. 2018, 149(9), 094903
Ammonium based stabilizers effectively counteract urea-induced denaturation in a small protein: insights from molecular dynamics simulations.
Sarkar, Soham; Ghosh, Soumadwip; Chakrabarti, Rajarshi.
RSC Adv., 2017, 7, 52888-52906
Can an ammonium-based room temperature ionic liquid counteract the urea-induced denaturation of a small peptide?.
Ghosh, Soumadwip; Dey, Souvik; Patel, Mahendra; Chakrabarti, Rajarshi.
Phys. Chem. Chem. Phys., 2017, 19, 7772-7787
Chain reconfiguration in active noise
Samanta, Nairhita; Chakrabarti, Rajarshi.
J. Phys. A, 2016, 49, 195601-195
Correction to "Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics" [Erratum to document cited in CA164:144866].
Ghosh, Soumadwip; Patel, Nisheet; Chakrabarti, Rajarshi.
J. Phys. Chem. B, 2016, 120, 2868
How does the tail length and the separation between the tagged monomers influence the reconfiguration of a chain with internal friction for different solvent-quality?.
Samanta, Nairhita; Chakrabarti, Rajarshi.
J. Phys.: Conf. Ser., 2016, 759, 012014.
Molecular dynamics simulation elucidates the preferential binding affinity of sodium and tetramethylammonium ions for tetrameric Nafion unit under aqueous conditions.
Ghosh, Soumadwip; Chakrabarti, Rajarshi.
RSC Adv., 2016, 6, 97961-97968
Probing the Salt Concentration Dependent Nucleobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics.
Ghosh, Soumadwip; Patel, Nisheet; Chakrabarti, Rajarshi.
J. Phys. Chem. B, 2016, 120, 455-466
Reconfiguration dynamics in folded and intrinsically disordered protein with internal friction: Effect of solvent quality and denaturant.
Samanta, Nairhita; Chakrabarti, Rajarshi.
Physica A, 2016, 450, 165-179
Spontaneous Unzipping of Xylonucleic Acid Assisted by a Single-Walled Carbon Nanotube: A Computational Study.
Ghosh, Soumadwip; Chakrabarti, Rajarshi.
J. Phys. Chem. B, 2016, 120, 3642-3652
Thermodynamics of site-specific small molecular ion interactions with DNA duplex: a molecular dynamics study.
Ghosh, Soumadwip; Dixit, Mayank Kumar; Chakrabarti, Rajarshi.
Mol. Simul., 2016, 42, 715-724
Tracer diffusion in a sea of polymers with binding zones: mobile vs. frozen traps.
Samanta, Nairhita; Chakrabarti, Rajarshi.
Soft Matter, 2016, 12, 8554-8563
Unzipping of Double-Stranded Ribonucleic Acids by Graphene and Single-Walled Carbon Nanotube: Helix Geometry versus Surface Curvature.
Ghosh, Soumadwip; Chakrabarti, Rajarshi.
J. Phys. Chem. C, 2016, 120, 22681-22693
Ion assisted structural collapse of a single stranded DNA: A molecular dynamics approach.
Ghosh, Soumadwip; Dixit, Himanshu; Chakrabarti, Rajarshi.
Chem. Phys., 2015, 459, 137-147
Looping dynamics of a flexible chain with internal friction at different degrees of compactness.
Samanta, Nairhita; Chakrabarti, Rajarshi.
Physica A, 2015, 436, 377-386
Diffusion in an elastic medium: A model for macromolecule transport across the nuclear pore complex
Chakrabarti, Rajarshi; Debnath, Ananya; Sebastian K. L.
Physica A, 2014, 404, 65-78
Looping and reconfiguration dynamics of a flexible chain with internal friction.
Samanta, Nairhita; Ghosh, Jayanta; Chakrabarti, Rajarshi.
AIP Adv., 2014, 4, 067102/1-067102/14
End to end loop formation in a single polymer chain with internal friction.
Samanta, Nairhita; Chakrabarti, Rajarshi.
Chem. Phys. Lett., 2013, 582, 71-77
Tracer diffusion in a crowded cylindrical channel.
Chakrabarti, Rajarshi; Kesselheim, Stefan; Kosovan, Peter; Holm, Christian.
Phys. Rev. E: Stat., Nonlinear, Soft Matter Phys., 2013, 87, 062709/1-062709/7
Dynamics of end-to-end loop formation for an isolated chain in viscoelastic fluid
Chakrabarti, Rajarshi.
Physica A, 2012, 391, 5326-5331
Dynamics of end-to-end loop formation: A flexible chain in the presence of hydrodynamic interaction
Chakrabarti, Rajarshi.
Physica A, 2012, 391, 4081-4087
Bubble dynamics in double stranded DNA: A Rouse chain based approach.
Chakrabarti, Rajarshi.
Chem. Phys. Lett., 2011, 502, 107-111
Packing correlations, collective scattering and compressibility of fractal-like aggregates in polymer nanocomposites and suspensions.
Chakrabarti, Rajarshi; Delannoy, Jean-Yves; Couty, Marc; Schweizer, Kenneth S.
Soft Matter, 2011, 7, 5397-5407
Dynamical disorder in presence of exponential sink.
Chakrabarti, Rajarshi.
Chem. Phys. Lett., 2010, 495, 60-62
Polymer-mediated spatial organization of nanoparticles in dense melts: Transferability and an effective one-component approach.
Chakrabarti, Rajarshi; Schweizer, Kenneth S.
J. Chem. Phys., 2010, 133, 144905.
A lower bound to the survival probability and an approximate first passage time distribution for Markovian and non-Markovian dynamics in phase space.
Chakrabarti, Rajarshi; Sebastian, K. L.
J. Chem. Phys., 2009, 131, 224504/1-224504/8
Transient state work fluctuation theorem for a classical harmonic oscillator linearly coupled to a harmonic bath.
Chakrabarti, Rajarshi.
Pramana, 2009, 72, 665-677
Exact analytical evaluation of time dependent transmission coefficient from the method of reactive flux for an inverted parabolic barrier.
Chakrabarti, Rajarshi.
J. Chem. Phys., 2007, 126, 134106.
Rate processes with dynamical disorder: A direct variational approach.
Debnath, Ananya; Chakrabarti, Rajarshi; Sebastian, K. L.
J. Chem. Phys., 2006, 124, 204111.